Publications

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2021

  1. Feroz H, Ferlez B, Oh H, Mohammadiarani H, Ren T, Baker CS, Gajewski JP, Lugar DJ, Gaudana SB, Butler P, Hühn J, Lamping M, Parak WJ, Blatt MR, Kerfeld CA, Smirnoff N, Vashisth H, Golbeck JH, Kumar M. Liposome-based measurement of light-driven chloride transport kinetics of halorhodopsin. Biochim Biophys Acta Biomembr. 2021 Aug 1;1863(8):183637. doi: 10.1016/j.bbamem.2021.183637. Epub 2021 Apr 27. PMID: 33930372.
  2. Cohan, C. L., & Griggs, L. A., & Hassler, R. S., & Johnson, M. W., & Kagan, M., & Butler, P. J., & Peeples, T. L. (2021, July), Sustainable Bridges from Campus to Campus: The Creation and Conduct of Online Synchronous Summer Bridge Programs in 2020 Paper presented at 2021 ASEE Virtual Annual Conference Content Access, Virtual Conference. https://peer.asee.org/37793
  3. Chen H, Zhu N, Osman M, Biskowitz R, Liu J, Khandare S, Butler P, Wong PK, Kothapalli SR. A transparent low intensity pulsed ultrasound (LIPUS) chip for high-throughput cell stimulation. Lab Chip. 2021 Dec 7;21(24):4734-4742. doi: 10.1039/d1lc00667c. PubMed PMID: 34739019.

2020

  1. Cohan, C. L., & Bandyopadhyay, P. K., & Hassler, R. S., & Johnson, M. W., & Kagan, M., & Schmiedekamp, A. M., & Shull, P. J., & Butler, P. J., & Peeples, T. L. (2020, June), Sustainable Bridges from Campus to Campus: Aggregate Results for Engineering Ahead Cohorts One to Three Paper presented at 2020 ASEE Virtual Annual Conference Content Access, Virtual On line . 10.18260/1-2–35259
  2. Butler PJ. Mechanobiology of dynamic enzyme systems. APL Bioeng. 2020 Mar 3;4(1):010907. doi: 10.1063/1.5133645. PMID: 32161834; PMCID: PMC7054122.

2019

  1. Butler PJ, Bhatnagar A. Mechanobiology of the abluminal glycocalyx. Biorheology 56 (2-3), 101-112
  2. S Son, HS Muddana, C Huang, S Zhang, PJ Butler. In situ, fluorescence lifetime-based measurements of cell membrane micromechanics. bioRxiv, 694620 2019
  3. Ghosh S, Mohajerani F, Son S, Velegol D, Butler PJ, Sen A. Motility of Enzyme-Powered Vesicles. Nano Lett. 2019 Sep 11;19(9):6019-6026. doi: 10.1021/acs.nanolett.9b01830. Epub 2019 Aug 20. PMID: 31429577.
  4. Collins M, Mohajerani F, Ghosh S, Guha R, Lee TH, Butler PJ, Sen A, Velegol D. Nonuniform Crowding Enhances Transport. ACS Nano. 2019 Jul 16;. doi: 10.1021/acsnano.9b02811. [Epub ahead of print] PubMed PMID: 31291087.

2018

  1. Linton SS, Abraham T, Liao J, Clawson GA, Butler PJ, Fox T, Kester M, Matters GL. Tumor-promoting effects of pancreatic cancer cell exosomes on THP-1-derived macrophages. PloS one. 2018; 13(11):e0206759.
  2. Feroz H, Ferlez B, Lefoulon C, Ren T, Baker CS, Gajewski JP, Lugar DJ, Gaudana SB, Butler PJ, Hühn J, Lamping M, Parak WJ, Hibberd JM, Kerfeld CA, Smirnoff N, Blatt MR, Golbeck JH, Kumar M. Light-Driven Chloride Transport Kinetics of Halorhodopsin. Biophysical journal. 2018; 115(2):353-360.
  3. Shen YX, Song WC, Barden DR, Ren T, Lang C, Feroz H, Henderson CB, Saboe PO, Tsai D, Yan H, Butler PJ, Bazan GC, Phillip WA, Hickey RJ, Cremer PS, Vashisth H, Kumar M. Achieving high permeability and enhanced selectivity for Angstrom-scale separations using artificial water channel membranes. Nature Communications  9, Article number: 2294 (2018)
  4. Q Wei, C Huang, Y Zhang, T Zhao, P Zhao, P Butler, S Zhang. Mechanotargeting: Mechanics‐Dependent Cellular Uptake of Nanoparticles. Advanced Materials, 1707464. 2018.
  5. X Zhao, H Palacci, V Yadav, MM Spiering, MK Gilson, PJ Butler, H Hess, SJ Benkovic, A Sen. Substrate-driven chemotactic assembly in an enzyme cascade. Nature Chemistry. 2018; 10(3):311-317.

2017

  1. Tang X, Loc WS, Dong C, Matters GL, Butler PJ, et al. The use of nanoparticulates to treat breast cancer. Nanomedicine (Lond). 2017 Oct;12(19):2367-2388. PubMed PMID: 28868970; PubMed Central PMCID: PMC5612024.
  2. Loc WS, Linton SS, Wilczynski ZR, Matters GL, McGovern CO, et al. Effective encapsulation and biological activity of phosphorylated chemotherapeutics in calcium phosphosilicate nanoparticles for the treatment of pancreatic cancer. Nanomedicine. 2017 Oct;13(7):2313-2324. PubMed PMID: 28673852; NIHMSID: NIHMS898038; PubMed Central PMCID: PMC5625839.
  3. Son S, Moroney GJ, Butler PJ. β1-Integrin-Mediated Adhesion Is Lipid-Bilayer Dependent. Biophys J. 2017 Sep 5;113(5):1080-1092. PubMed PMID: 28877491; PubMed Central PMCID: PMC5611673.
  4. Zhao X, Dey KK, Jeganathan S, Butler PJ, Córdova-Figueroa UM, et al. Enhanced Diffusion of Passive Tracers in Active Enzyme Solutions. Nano Lett. 2017 Aug 9;17(8):4807-4812. PubMed PMID: 28726415.
  5. Illien P, Zhao X, Dey KK, Butler PJ, Sen A, et al. Exothermicity Is Not a Necessary Condition for Enhanced Diffusion of Enzymes. Nano Lett. 2017 Jul 12;17(7):4415-4420. PubMed PMID: 28593755.
  6. Ren T, Erbakan M, Shen Y, Barbieri E, Saboe P, et al. Membrane Protein Insertion into and Compatibility with Biomimetic Membranes. Advanced Biosystems. 2017 June 16; 1(7):1-10.
  7. Dabagh M, Jalali P, Butler PJ, Randles A, Tarbell JM. Mechanotransmission in endothelial cells subjected to oscillatory and multi-directional shear flow. J R Soc Interface. 2017 May;14(130)PubMed PMID: 28515328; PubMed Central PMCID: PMC5454307.
  8. Clawson GA, Abraham T, Pan W, Tang X, Linton SS, et al. A Cholecystokinin B Receptor-Specific DNA Aptamer for Targeting Pancreatic Ductal Adenocarcinoma. Nucleic Acid Ther. 2017 Feb;27(1):23-35. PubMed PMID: 27754762; PubMed Central PMCID: PMC5312616.

2016

  1. Huang C, Ozdemir T, Xu LC, Butler PJ, Siedlecki CA, et al. The role of substrate topography on the cellular uptake of nanoparticles. J Biomed Mater Res B Appl Biomater. 2016 Apr;104(3):488-95. PubMed PMID: 25939598; NIHMSID: NIHMS699483; PubMed Central PMCID: PMC4755929.
  2. Eckman M, Gigliotti C, Sutermaster S, Butler PJ, Mehta K. Using handgrip strength to screen for diabetes in developing countries J Med Eng Technol. 2016;40(1):8-14. PubMed PMID: 26623523.
  3. Butler PJ (2016) Mechanotransduction of Shear Stress by the Endothelium. In: Tanishita K., Yamamoto K. (eds) Vascular Engineering. Springer, Tokyo (Book Chapter)

2015

  1. Shen YX, Si W, Erbakan M, Decker K, De Zorzi R, et al. Highly permeable artificial water channels that can self-assemble into two-dimensional arrays. Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):9810-5. PubMed PMID: 26216964; PubMed Central PMCID: PMC4538642.
  2. Butler PJ, Dey KK, Sen A. Impulsive Enzymes: A New Force in Mechanobiology. Cell Mol Bioeng. 2015 Mar 1;8(1):106-118. PubMed PMID: 26019728; NIHMSID: NIHMS657163; PubMed Central PMCID: PMC4442092.
  3. Ranslow A, Crompton D, Mehta K, Butler PJ, Adair J. Empowering community health workers with inkjet-printed diagnostic test strips. Procedia Engineering. 2015 January 01; 107:205-214.
  4. Dzombak R, Mehta K, Butler PJ. An Example-Centric Tool for Context-Driven Design of Biomedical Devices. Advances in engineering education. 2015; 4(3):1-32.
  5. Son S, Butler PJ. Lipid bilayer control of nascent adhesion formation. Biomedical engineering letters. 2015; 5(3):172-180.
  6. Yadav V, Duan W, Butler PJ, Sen A. Anatomy of Nanoscale Propulsion. Annu Rev Biophys. 2015;44:77-100. PubMed PMID: 26098511.
  7. Butler PJ, Muddana HS, Farag S. (2015) Mechanobiology of the Cell Membrane in Cell and Matrix Mechanics by Kaunas R and Zemel A. (Book Chapter)

2014

  1. Dey KK, Das S, Poyton MF, Sengupta S, Butler PJ, et al. Chemotactic separation of enzymes. ACS Nano. 2014 Dec 23;8(12):11941-9. PubMed PMID: 25243599.
  2. Ahmed D, Muddana HS, Lu M, French JB, Ozcelik A, et al. Acoustofluidic chemical waveform generator and switch. Anal Chem. 2014 Dec 2;86(23):11803-10. PubMed PMID: 25405550; PubMed Central PMCID: PMC4255676.
  3. Muddana HS, Sengupta S, Sen A, Butler PJ. Enhanced brightness and photostability of cyanine dyes by supramolecular containment. arXiv preprint. 2014 October 02; :1-20.
  4. Dabagh M, Jalali P, Butler PJ, Tarbell JM. Shear-induced force transmission in a multicomponent, multicell model of the endothelium. J R Soc Interface. 2014 Sep 6;11(98):20140431. PubMed PMID: 24966239; PubMed Central PMCID: PMC4233691.
  5. Sengupta S, Spiering MM, Dey KK, Duan W, Patra D, et al. DNA polymerase as a molecular motor and pump. ACS Nano. 2014 Mar 25;8(3):2410-8. PubMed PMID: 24601532.
  6. Erbakan M, Shen YX, Grzelakowski M, Butler PJ, Kumar M, et al. Molecular cloning, overexpression and characterization of a novel water channel protein from Rhodobacter sphaeroides. PLoS One. 2014;9(1):e86830. PubMed PMID: 24497982; PubMed Central PMCID: PMC3909002.

2013

  1. Johnstone J, Bacik B, Burke S, Dzombak R, Mehta K, et al. Affordable dermascope for resource-poor settings. Global Humanitarian Technology Conference. 2013 October 20; :314-320.
  2. Dai JP, Tabakovic A, Loc W, Butler A, McGovern CO, et al. Development of an Ultrasensitive LC–MS-MS Method for Determination of 5-Fluorouracil in Mouse Plasma. Spectroscopy. 2013 October 01; :1-8.
  3. Mathern RM, Schopman S, Kalchthaler K, Mehta K, Butler P. Design of affordable and ruggedized biomedical devices using virtual instrumentation. J Med Eng Technol. 2013 May;37(4):237-51. PubMed PMID: 23688039.
  4. Huang C, Butler PJ, Tong S, Muddana HS, Bao G, et al. Substrate stiffness regulates cellular uptake of nanoparticles. Nano Lett. 2013 Apr 10;13(4):1611-5. PubMed PMID: 23484640.
  5. Sengupta S, Dey KK, Muddana HS, Tabouillot T, Ibele ME, et al. Enzyme molecules as nanomotors. J Am Chem Soc. 2013 Jan 30;135(4):1406-14. PubMed PMID: 23308365.
  6. Schopman S, Kalchthaler K, Malthern R, Mehta K, Butler PJ. Ruggedising biomedical devices for field-testing in resource-constrained environments: Context, issues and solutions. Journal of Humanitarian Engineering. 2013; 2(1):17-26.
  7. Butler PJ, Chien S. Role of the plasma membrane in endothelial cell mechanosensation of shear stress in Cellular Mechanotransduction: Diverse Perspectives from Molecules to Tissues eds: Mofrad M and Kamm R. 1 January 2013, Pages 61-88. (Book Chapter)

2012

  1. Brown G, Butler PJ, Chang DW, Chien S, Clegg RM, et al. Cellular and Molecular Bioengineering: A Tipping Point. Cell Mol Bioeng. 2012 Sep 1;5(3):239-253. PubMed PMID: 23264805; NIHMSID: NIHMS406115; PubMed Central PMCID: PMC3525706.
  2. Fuentes DE, Butler PJ. Coordinated Mechanosensitivity of Membrane Rafts and Focal Adhesions. Cell Mol Bioeng. 2012 Jun 1;5(2):143-154. PubMed PMID: 23487555; NIHMSID: NIHMS439420; PubMed Central PMCID: PMC3593241.
  3. Muddana HS, Chiang HH, Butler PJ. Tuning membrane phase separation using nonlipid amphiphiles. Biophys J. 2012 Feb 8;102(3):489-97. PubMed PMID: 22325271; PubMed Central PMCID: PMC3274828.

2011

  1. Fuentes DE, Bae C, Butler PJ. Focal Adhesion Induction at the Tip of a Functionalized Nanoelectrode. Cell Mol Bioeng. 2011 Dec;4(4):616-626. PubMed PMID: 22247742; NIHMSID: NIHMS344807; PubMed Central PMCID: PMC3256556.
  2. Tabouillot T, Muddana HS, Butler PJ. Endothelial Cell Membrane Sensitivity to Shear Stress is Lipid Domain Dependent. Cell Mol Bioeng. 2011 Jun 1;4(2):169-181. PubMed PMID: 22247740; NIHMSID: NIHMS239816; PubMed Central PMCID: PMC3254098.
  3. Muddana HS, Gullapalli RR, Manias E, Butler PJ. Atomistic simulation of lipid and DiI dynamics in membrane bilayers under tension. Phys Chem Chem Phys. 2011 Jan 28;13(4):1368-78. PubMed PMID: 21152516; NIHMSID: NIHMS346492; PubMed Central PMCID: PMC3267629.

2010 and prior

  1. Muddana HS, Sengupta S, Mallouk TE, Sen A, Butler PJ. Substrate catalysis enhances single-enzyme diffusion. J Am Chem Soc. 2010 Feb 24;132(7):2110-1. PubMed PMID: 20108965; NIHMSID: NIHMS174729; PubMed Central PMCID: PMC2832858.
  2. Muddana HS, Morgan TT, Adair JH, Butler PJ. Photophysics of Cy3-encapsulated calcium phosphate nanoparticles. Nano Lett. 2009 Apr;9(4):1559-66. PubMed PMID: 19260707; NIHMSID: NIHMS99982; PubMed Central PMCID: PMC2712951.
  3. Butler PJ. Motivating Undergraduates to Use Their Engineering: Integrating COMSOL Multiphysics and Designs for World Health. International Journal of Engineering Education. 2009; 25(6):1097-1104.
  4. PJ Butler, RR Gullapalli, T Tabouillot, MC Ferko. Time-Correlated, Single-Photon Counting Methods in Endothelial Cell Mechanobiology
    in Reviews in Fluorescence 2009, 127-153 (Book Chapter).
  5. Morgan TT, Muddana HS, Altinoglu EI, Rouse SM, Tabaković A, et al. Encapsulation of organic molecules in calcium phosphate nanocomposite particles for intracellular imaging and drug delivery. Nano Lett. 2008 Dec;8(12):4108-15. PubMed PMID: 19367837; NIHMSID: NIHMS133527; PubMed Central PMCID: PMC3267632.
  6. Bae C, Butler PJ. Finite element analysis of microelectrotension of cell membranes. Biomech Model Mechanobiol. 2008 Oct;7(5):379-86. PubMed PMID: 17657517; NIHMSID: NIHMS133523; PubMed Central PMCID: PMC3251963.
  7. Gullapalli RR, Demirel MC, Butler PJ. Molecular dynamics simulations of DiI-C18(3) in a DPPC lipid bilayer. Phys Chem Chem Phys. 2008 Jun 28;10(24):3548-60. PubMed PMID: 18548161; NIHMSID: NIHMS133525; PubMed Central PMCID: PMC3251217.
  8. Butler PJ, Dong C, Snyder AJ, Jones AD, Sheets ED. Bioengineering and Bioinformatics Summer Institutes: meeting modern challenges in undergraduate summer research. CBE Life Sci Educ. 2008 Spring;7(1):45-53. PubMed PMID: 18316807; PubMed Central PMCID: PMC2262124.
  9. Dangaria JH, Butler PJ. Macrorheology and adaptive microrheology of endothelial cells subjected to fluid shear stress. Am J Physiol Cell Physiol. 2007 Nov;293(5):C1568-75. PubMed PMID: 17670893; NIHMSID: NIHMS133524; PubMed Central PMCID: PMC3251213.
  10. Dangaria JH, Yang S, Butler PJ. Improved nanometer-scale particle tracking in optical microscopy using microfabricated fiduciary posts. Biotechniques. 2007 Apr;42(4):437-8, 440. PubMed PMID: 17489228; NIHMSID: NIHMS133522; PubMed Central PMCID: PMC3251210.
  11. Ferko MC, Bhatnagar A, Garcia MB, Butler PJ. Finite-element stress analysis of a multicomponent model of sheared and focally-adhered endothelial cells. Ann Biomed Eng. 2007 Feb;35(2):208-23. PubMed PMID: 17160699; NIHMSID: NIHMS133520; PubMed Central PMCID: PMC3251212.
  12. Gullapalli RR, Tabouillot T, Mathura R, Dangaria JH, Butler PJ. Integrated multimodal microscopy, time-resolved fluorescence, and optical-trap rheometry: toward single molecule mechanobiology. J Biomed Opt. 2007 Jan-Feb;12(1):014012. PubMed PMID: 17343487; NIHMSID: NIHMS133521; PubMed Central PMCID: PMC3251961.
  13. Bae C, Butler PJ. Automated single-cell electroporation. Biotechniques. 2006 Oct;41(4):399-400, 402. PubMed PMID: 17068953; NIHMSID: NIHMS133519; PubMed Central PMCID: PMC3251211.
  14. Ferko MC, Patterson BW, Butler PJ. High-resolution solid modeling of biological samples imaged with 3D fluorescence microscopy. Microsc Res Tech. 2006 Aug;69(8):648-55. PubMed PMID: 16758474; NIHMSID: NIHMS133518; PubMed Central PMCID: PMC3251964.
  15. Li S, Butler P, Wang Y, Hu Y, Han DC, et al. The role of the dynamics of focal adhesion kinase in the mechanotaxis of endothelial cells. Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3546-51. PubMed PMID: 11891289; PubMed Central PMCID: PMC122560.
  16. Butler PJ, Tsou TC, Li JY, Usami S, Chien S. Rate sensitivity of shear-induced changes in the lateral diffusion of endothelial cell membrane lipids: a role for membrane perturbation in shear-induced MAPK activation. FASEB J. 2002 Feb;16(2):216-8. PubMed PMID: 11744620.
  17. Butler PJ, Norwich G, Weinbaum S, Chien S. Shear stress induces a time- and position-dependent increase in endothelial cell membrane fluidity. Am J Physiol Cell Physiol. 2001 Apr;280(4):C962-9. PubMed PMID: 11245613.
  18. Butler PJ, Weinbaum S, Chien S, Lemons DE. Endothelium-dependent, shear-induced vasodilation is rate-sensitive. Microcirculation. 2000 Feb;7(1):53-65. PubMed PMID: 10708337.