Total of 7 sessions have been running this spring! This is part of my education project namely EIBDG (Education Initiative in Big Data Genomics). Since this was my 1st sessions, I invited only existing Core users, but in the future sessions (coming back in fall!) I will call any level of participants! Only that the space is limited so I will limit participants by first come first served basis.
date | contents | |
NAT1 | 3/3/17 | useful unix commands |
NAT2 | 3/24/17 | FastQC, Fastq filtering, RNA-seq alignment, Cufflinks |
NAT3 | 4/7/17 | smRNA-seq, how to transfer files, RNA–seq; manipulating more on.bam; QC Picard, visualizing in IGV, UCSC track, subfractioning |
NAT4 | 4/21/17 | Reviewing NAT1-3… More analysis by R; PCA, heatmap, etc, differential gene expression (other than Cufflinks) |
NAT5 | 5/10/17 (Wed) in HG318 | Exome alignment, variant calling, variant annotation |
NAT6 | 6/2/17 (Fri) in C2610 | SRA, dbGap, TCGA, optional: GSEA |
NAT7 | 6/9/17 | ChIP-seq alignment, peak calling, differential binding analysis |
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