A new paper on an epigenomic regulation of synaptic activity came out!!!
Summer closing for NGS library prep services
Due to lack of the staff, we will be closing for NGS library prep services during summer 2018, likely starting from mid June. Sorry for any inconveniences. Sequencing only services should be still available over summer if you submit ready-made NGS libraries. In the meantime (or anytime!), the Genomics Core at University Park campus will be available taking your NGS library prep services. Please let me know if you are interested in this option. Once the new hires are here and get trained, we plan to re-open the library prep services in fall. Please let me know if you have any questions. Thank you! -Yuka
Shauna is presenting at Neuroscience Student Seminar
My graduate student, Shauna, will be presenting her work at Neuroscience Student Seminar on Thursday (May 24)!
The seminar is entitled ““Neuronal Enriched Exosomal miRNA Biomarkers in Parkinson’s Disease”
Good luck, Shauna, you can do it!!!
Got an award in teaching!
It’s such an honor to receive an Dean’s Award for Excellence in Teaching 2018, from Penn State College of Medicine!!!
Thank you for all of my collaborators and students!!!
Sincerely,
Yuka
2 papers got published!
- Wu X, Gowda NM, Kawasawa YI, Gowda DC. A malaria protein factor induces IL-4 production by dendritic cells via PI3K-Akt-NF-κB signaling independent of MyD88/TRIF and promotes Th2 response. J Biol Chem. 2018 Apr 17. pii:jbc.AC118.001720. doi: 10.1074/jbc.AC118.001720. [Epub ahead of print] PubMed PMID: 29666186.
- Salzberg, A. C.; Hu, J.; Conroy, E. J.; Cladel, N. M.; Brucklacher, R. B.; Bixler, G. B.; Imamura Kawasawa, Y. Effects of duplicated mapped read PCR artifacts on RNA-seq differential expression analysis based on qRNA-seq. bioRxiv 2018 Apr 13. doi: https://doi.org/10.1101/301259
A metagenome paper is out!!!
A skin microbiome paper is out from Amanda Nelson’s team! Congrats!!!
Hall JB, Cong Z, Imamura-Kawasawa Y, Kidd BA, Dudley JT, Thiboutot DM, Nelson AM. Isolation and Identification of the Follicular Microbiome: Implications for Acne Research. J Invest Dermatol. 2018 Mar 13. pii: S0022-202X(18)30224-0. doi: 10.1016/j.jid.2018.02.038. [Epub ahead of print] PubMed PMID: 29548797.
Project cost comparison HiSeq2500 vs NovaSeq6000
For users that have been using HiSeq2500, Illumina announced its discontinuation in 5 years and we will be gradually switching projects to NovaSeq6000. The new submission form is just made available for you from below link (for internal users only, external users: please inquire Yuka).
https://sites.psu.edu/yuka/ngs-submission-form-internal-users/
Thank you!
Yuka
Pharmacology Seminar by Eugene today!
Population genomics paper is out!
Team Janicki discovered rare deleterious variants for iskemic stroke patients! The unique experimental approach is a big highlight of this study!
Janicki PK, Eyileten C, Ruiz-Velasco V, Sedeek KA, Pordzik J, Czlonkowska A, Kurkowska-Jastrzebska I, Sugino S, Imamura-Kawasawa Y, Mirowska-Guzel D, Postula M. Population-Specific Associations of Deleterious Rare Variants in Coding Region of P2RY1-P2RY12 Purinergic Receptor Genes in Large-Vessel Ischemic Stroke Patients. Int J Mol Sci. 2017 Dec 11; 18(12).
New web site just got on live!
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