Mai T. Huynh, Bhaswati Sengupta, Wladyslaw A. Krajewski, and Tae-Hee Lee*, Effects of histone H2B ubiquitylations and H3K79me3 on transcription elongation, ACS Chem Biol 18 537 (2023)
Subhra K. Das, Mai T. Huynh, and Tae-Hee Lee*, Spontaneous histone exchange between nucleosomes, J Biol Chem 299 8 (2023)
Subhra K. Das, Ashok Kumar, Fanfan Hao, Amber R Cutter DiPiazza, He Fang, Tae-Hee Lee*, and Jeffrey J Hayes*, Histone H3 Tail Modifications Alter Structure and Dynamics of the H1 C-Terminal Domain Within Nucleosomes, J Mol Biol 435 19 (2023)
Subhra K. Das+, Mai T. Huynh+, Jia Gao, Bhaswati Sengupta, Satya P. Yadav, and Tae-Hee Lee*, Methods to investigate nucleosome structure and dynamics with single-molecule FRET, Methods 215 17 (2023)
Cathy J Spangler+, Satya P Yadav+, Dongxu Li+, Carinne N Geil, Charlotte B Smith, Gang Greg Wang*, Tae-Hee Lee*, and Robert K McGinty*, Dot1L activity in leukemia cells requires interaction with ubiquitylated H2B that promotes productive nucleosome binding, Cell Reports 38, 110369 (2022)
Bhaswati Sengupta, Mai T Huynh, Charlotte B Smith, Robert K McGinty, Wladyslaw Krajewski, and Tae-Hee Lee*, The effects of histone H2B ubiquitylations on the nucleosome structure and internucleosomal interactions, Biochemistry 61, 2198 (2022)
Shi Ho Kim and Tae-Hee Lee*, Conformational dynamics of poly(T) single-stranded DNA at the single-molecule level, J. Phys. Chem. Lett. 12 4576 (2021)
Eitan Lerner*, Anders Barth*, Jelle Hendrix*, Benjamin Ambrose, Victoria Birkedal, Scott C Blanchard, Richard Borner, Hoi Sung Chung, Thorben Cordes, Timothy D Craggs, Ashok A Deniz, Jiajie Diao, Jingyi Fei, Ruben L Gonzalez, Irina V Gopich, Taekjip Ha, Christian A Hanke, Gilad Haran, Nikos S Hatzakis, Sungchul Hohng, Seok-Cheol Hong, Thorsten Hugel, Antonino Ingargiola, Chirlmin Joo, Achillefs N Kapanidis, Harold D Kim, Ted Laurence, Nam Ki Lee, Tae-Hee Lee, Edward A Lemke, Emmanuel Margeat, Jens Michaelis, Xavier Michalet, Sua Myong, Daniel Nettels, Thomas-Otavio Peulen, Evelyn Ploetz, Yair Razvag, Nicole C Robb, Benjamin Schuler, Hamid Soleimaninejad, Chun Tang, Reza Vafabakhsh, Don C Lamb, Claus AM Seidel*, Shimon Weiss*, FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices, eLife 10 e60416 (2021)
Mai Huynh, Satya Prakash, Joseph Reese, and Tae-Hee Lee*, Nucleosome dynamics during transcription elongation, ACS Chem. Biol. 15 3133 (2020)
Mingjie Li, Bhaswati Sengupta, Stephen Benkovic, Tae-Hee Lee*, and Mark Hedglin*, PCNA monoubiquitination is regulated by diffusion of Rad6/Rad18 complexes along RPA filaments, Biochemistry 59 4694 (2020)
Shi Ho Kim, Yu Liu, Conner Hoelzel, Xin Zhang*, and Tae-Hee Lee*, Super-resolution Optical Lithography with DNA, Nano Lett. 19 6035 (2019)
Tae-Hee Lee*, Physical Chemistry of Epigenetics: Single-Molecule Investigations, J. Phys. Chem. B 123 8351 (2019)
Jaehyoun Lee and Tae-Hee Lee*, How Protein Binding Sensitizes the Nucleosome to Histone H3K56 Acetylation, ACS Chem. Biol. 14 506 (2019)
Jaehyoun Lee, J. Brooks Cricakrd, Joseph C. Reese, and Tae-Hee Lee*, Single-molecule FRET method to investigate the dynamics of transcription elongation through the nucleosome by RNA polymerase II, Methods 159-160 51 (2019)
Sandipan Brahma+, Meheshi Udugama+, Jongseong Kim+, Arjan Hada, Saurabh Bhardwaj, Solomon Hailu, Tae-Hee Lee*, and Blaine Bartholomew*, INO80 exchanges H2A.Z for H2A by translocating on DNA proximal to histone dimers, Nat. Commun. 8 15161 (2017)
Jaehyoun Lee and Tae-Hee Lee*, Single-molecule investigations on histone H2A-H2B dynamics in the nucleosome, Biochemistry 56 977 (2017)
J. Brooks Crickard, Jaehyoun Lee, Tae-Hee Lee, and Joseph C. Reese*, The elongation factor Spt4/5 regulates RNA Polymerase II transcription through the nucleosome, Nucleic Acids Res. 45 6362 (2017)
Jongseong Kim, Sijie Wei, Jaehyoun Lee, Hongjun Yue, and Tae-Hee Lee*, Single molecule observation reveals spontaneous protein dynamics in the nucleosome, J. Phys. Chem. B 120 8925 (2016)
He Fang, Sijie Wei, Tae-Hee Lee, and Jeffrey J. Hayes*, Chromatin structure-dependent conformations of the H1 CTD, Nucleic Acids Res. 44 9131 (2016)
Samantha J. Falk+, Jaehyoun Lee+, Nicolina Sekulic, Michael A. Sennett, Tae-Hee Lee*, and Ben E. Black*, CENP-C directs a structural transition of the CENP-A nucleosome mainly through sliding of DNA gyres, Nat. Struct. Mol. Biol. 23 204 (2016)
Hongjun Yue, He Fang, Sijie Wei, Jeffrey J. Hayes, and Tae-Hee Lee*, Single-Molecule Studies of the Linker Histone H1 Binding to DNA and the Nucleosome, Biochemistry 55 2069 (2016)
Jongseong Kim, Jaehyoun Lee, and Tae-Hee Lee*, Lysine acetylation facilitates spontaneous DNA dynamics in the nucleosome, J. Phys. Chem. B 119 15001 (2015)
Sijie Wei, Samantha J. Falk, Ben E. Black, and Tae-Hee Lee*, A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome, Nucleic Acids Res. 43 e111 (2015)
Ju Yeon Lee, Jaehyoun Lee, Hongjun Yue, and Tae-Hee Lee*, Dynamics of chaperone-mediated nucleosome assembly and effects of CpG methylation, J. Biol. Chem. 290 4291 (2015)
Abhinav Dhall+, Sijie Wei+, Beat Fierz, Christopher L. Woodcock*, Tae-Hee Lee*, and Champak Chatterjee*, Sumoylated human histone H4 prevents chromatin compaction by inhibiting long-range internucleosomal interactions, J. Biol. Chem. 289 33827 (2014)
Lin Wang, Xiaojun Xi, Ravindra Kumar, Buddhadev Maiti, C. Tony Liu, Ivaylo Ivanov, Tae-Hee Lee*, and Stephen Benkovic*, Probing DNA clamps with single molecule force spectroscopy, Nucleic Acids Res. 41 7804 (2013)
Senthil Perumal, Wenhui Ren, Tae-Hee Lee*, and Stephen Benkovic*, How a holoenzyme for DNA replication is formed, PNAS 110 99 (2013)
John Choy and Tae-Hee Lee*, Dynamics of nucleosomes at single molecule resolution, Trends. Biochem. Sci. 37 425 (2012)
Ju Yeon Lee and Tae-Hee Lee*, Effects of histone acetylation and CpG methylation on the structure of nucleosomes, BBA – Proteins and Proteomics 1824 974 (2012)
Ju Yeon Lee and Tae-Hee Lee*, Effects of DNA methylation on the structure of nucleosomes, J. Am. Chem. Soc. 134 173 (2012)
Ju Yeon Lee, Sijie Wei, and Tae-Hee Lee*, Effects of histone acetylation by Piccolo NuA4 on the structure of a nucleosome and the interactions between two nucleosomes, J. Biol. Chem. 286 11099 (2011)
Chen-Yu Liu, Mohd Tanvir Qureshi, and Tae-Hee Lee*, Interaction strengths between the ribosome and tRNA at various steps of translocation, Biophys. J. 100 2201 (2011)
Padmaja Mishra, Mohd Tanvir Qureshi, Wenhui Ren, and Tae-Hee Lee*, Codon dependent tRNA fluctuations monitored with fluorescence polarization, Biophys. J. 99 3849 (2010)
Ravindra Kumar, Vishal Nahine, Padmaja Mishra, Stephen Benkovic*, and Tae-Hee Lee*, Stepwise loading of yeast clamp revealed by ensemble and single-molecule studies, PNAS 107 19736 (2010)
John Choy, Sijie Wei, Ju Yeon Lee, Song Tan, Steven Chu, and Tae-Hee Lee*, DNA methylation increases nucleosome compaction and rigidity, J. Am. Chem. Soc. 132 1782 (2010)
S Ranjini Arumugam, Tae-Hee Lee*, and Stephen J Benkovic*, Investigation of stoichiometry of T4 bacteriophage helicase loader protein (gp59), J. Biol. Chem. 284 29283 (2009)
Tae-Hee Lee*, Extracting kinetics information from single-molecule fluorescence resonance energy transfer data using hidden Markov models, J. Phys. Chem. B 113 11535 (2009) (HMM FRET analysis code and manual)
Tae-Hee Lee, Scott Blanchard, Harold Kim, Joseph Puglisi*, and Steven Chu*, The role of fluctuations in tRNA selection by the ribosome, PNAS 104 13661 (2007)
Sotaro Uemura, Magdalena Dorywalska, Tae-Hee Lee, Harold D. Kim, Joseph D. Puglisi*, and Steven Chu*, Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome, Nature 446 454 (2007)
Tae-Hee Lee*, Lisa Lapidus, Wei Zhao, Daniel Herschlag, and Steven Chu, Measuring the folding transition time of single RNA molecules, Biophys. J. 92 3275 (2007)