Software and other scripts can be found on the lab’s Github organization: https://github.com/The-Bevilacqua-Lab
R2easyR
Manually drawing experimental RNA reactivity data as colors on a secondary structure is time-consuming and error-prone. R2easyR, when used with the drawing program R2R, makes processing reactivity data, and drawing the reactivity on a secondary structure much easier. With a small amount of workup in a drawing program, the output of the mostly automated R2easyR/R2R pipeline produces publication-ready figures rapidly.
Github: https://github.com/JPSieg/R2easyR
Jacob P. Sieg, Peter C. Forstmeier, & Philip C. Bevilacqua. (2021, April 13). JPSieg/R2easyR: R2easyR v1.1 (Version v1.1). Zenodo. http://doi.org/10.5281/zenodo.4683742
FRID
The Functional RNA Identification (FRID) Pipeline: Identification of Potential Pseudoknot-Containing RNA Elements as Therapeutic Targets for SARS-CoV-2
Github: https://github.com/forstmeier-pc/FRID
Peter C. Forstmeier, McCauley O. Meyer, and Philip C. Bevilacqua
doi: https://doi.org/10.1101/2023.04.03.535424
This page is maintained by Kobie Kirven.